ClosedSuppliesEuropeanOnderhandeling zonder bekendmakingGreen

Procurement of High Throughput Sequencing platform

Name: Procurement of High Throughput Sequencing platform
Creator: Stichting Amsterdam UMC
Published: 2024-04-17
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: high throughput sequencing, DNA sequencer, Illumina, long-read sequencing, WGS, WES, RNA‑seq, ORC compression, service support, sustainability

Stichting Amsterdam UMC · Onderhandeling zonder bekendmaking · 1 lots · 332693

0 of 6 core insights found

Measures presence, not accuracy · documents remain authoritative

ScopeAdvicePoints of attentionSuitability requirementsAward criteriaTimeline

Type

Supplies

38900000

Estimated value

Not published

To deadline

Ongoing

Knock-outs

n/a

exclusion grounds

Award basis

Best price-quality ratio

Assess manuallyconfidence low

Stichting Amsterdam UMC is looking for a high-throughput DNA sequencer capable of performing approximately 15,000 whole-genome sequencings (WGS) annually. The platform must be flexible in terms of run format and read length, support on-board secondary analysis (for WGS, WES, and RNA-seq), and be able to generate FASTQ files. Integrated ORA compression is required. Compatibility with Illumina and other commercial library prep kits, preferably without additional conversion, is essential. Additionally, the system must also be suitable for long-read sequencing. The supplier must have another UMC as a reference, demonstrate a proven track record in service, support, and maintenance, and guarantee sustainable handling of reagents. The procedure is negotiations without prior publication, which allows for rapid decision-making.

Supplies · Onderhandeling zonder bekendmaking · European procedure

Sustainability countsEuropean

Contracting authority

Stichting Amsterdam UMC

Contract type

Supplies

Onderhandeling zonder bekendmaking

Estimated value

Estimate not published

Submission deadline

Ongoing

Scope

European

European procedure

Lots

1 lots

Main CPV code

38900000

Location

Netherlands

CharacteristicsCPV 38SuppliesEU tenderGreen / SPPhigh throughput sequencingDNA sequencerIllumina

01What is being requested

Stichting Amsterdam UMC is looking for a high-throughput DNA sequencer capable of performing approximately 15,000 whole-genome sequencings (WGS) annually. The platform must be flexible in terms of run format and read length, support on-board secondary analysis (for WGS, WES, and RNA-seq), and be able to generate FASTQ files. Integrated ORA compression is required. Compatibility with Illumina and other commercial library prep kits, preferably without additional conversion, is essential. Additionally, the system must also be suitable for long-read sequencing. The supplier must have another UMC as a reference, demonstrate a proven track record in service, support, and maintenance, and guarantee sustainable handling of reagents. The procedure is negotiations without prior publication, which allows for rapid decision-making.

To continue meeting the requirements for high-quality diagnostics and research, the CFG is looking for a high throughput DNA sequencer that meets the following criteria: • Capacity of the platform is ±15,000 whole genome sequences per year; • Flexibility in run format and read length configurations; • Ability to perform on-board secondary analysis, especially for WGS/WES as well as RNA (transcriptomics), as well as conversion to FastQ files; • Integrated ORA (original read archive) compression (reduction of FASTQ file); • Compatibility with Illumina and other commercially available library pr

38900000Supplies

1Procurement of High Throughput Sequencing platform€1

02Exclusion grounds

Exclusion grounds — consult the ESPD

No specific exclusion grounds were extracted. In a European tender, the mandatory and discretionary grounds of art. 2.86/2.87 of the Dutch Procurement Act almost always apply — check the European Single Procurement Document (ESPD).

03Value in context

Estimate not published

The contracting authority did not publish an estimated value — common for a large share of contracts. The EU threshold for leveringen is € 221.000, for reference.

04Likely competitors

#Likely bidderFitWins

1Bruker Nederland B.V.SME7313×

2Waters Chromatography B.V.SME6712×

3Agilent Technologies Netherlands B.V.SME6610×

4Carl Zeiss B.V.SME6410×

5Interscience B.V.SME636×

6Thermo Fisher ScientificUnknown606×

05Legal themes that may be relevant here

Advies 475> Beklaagde, een samenwerkingsverband van gemeenten [A], [B], [C] en [D], heeft op 29 maart 2018 een Europese openbare aanbestedin Advies 451> Beklaagden hebben op 29 mei 2017 een Europese openbare aanbestedingsprocedure aangekondigd voor een raamovereenkomst per perceel Advies 243> Meervoudig onderhandse procedure. Dat de aanbestedende dienst met een SaaS (Software as a Service) oplossing besparingen zou kun Advies 48> Europese niet-openbare procedure voor werktuigkundige en elektrotechnische installaties van de nieuwbouw van een multifunctionel Advies 424> Beklaagde heeft mede namens vier andere organisaties een Europese openbare procedure aangekondigd voor raamovereenkomsten met ééComplaint dismissed

06Frequently asked questions

What technical capacity must the sequencing platform meet?

The platform must have a capacity of approximately 15,000 whole genome sequences per year and be flexible in run format and read length configurations.

What data analysis and compression capabilities are required?

The system must support on-board secondary analysis for WGS, WES, and RNA (transcriptomics), including conversion to FastQ files. Additionally, integrated ORA (original read archive) compression for the reduction of FASTQ files is required.

What compatibility and applications are expected from the sequencer?

The system must be compatible with Illumina and other commercially available library prep kits, preferably without conversion. The system must also be suitable for long-read sequencing.

What requirements are imposed on the supplier?

The supplier must be able to provide another UMC as a reference, demonstrate a proven track record in service, support, and maintenance, and guarantee a sustainability-oriented handling of the required reagents.

Automatically compiled from the official tender data and documents.

07Estimated value versus the market

p25
€ 300K

median
€ 515K

p75
€ 1,7 mln

deze opdracht

Gegunde waarden in CPV 38 · leveringen n=331